VISDB Viral Integration Site DataBase

VIS ID

TVIS44021782

Fusion event

HTLV-1-CLSPN integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p34.3

Reference genome

Start

End

36235026/35769425 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-148b-3p ; hsa-mir-128-3p ; hsa-mir-122-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-423-5p ; hsa-mir-615-3p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-4668-5p ; hsa-mir-7855-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-7106-5p ; hsa-mir-149-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-1827 ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-3192-5p ; hsa-mir-4756-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-4503 ; hsa-mir-4477a ; hsa-mir-6792-5p ; hsa-mir-545-3p ; hsa-mir-4698 ; hsa-mir-8063 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-548p ; hsa-mir-4760-3p ; hsa-mir-1303 ; hsa-mir-3149 ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-6504-5p ; hsa-mir-3064-5p ; hsa-mir-29a-5p ; hsa-mir-483-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-3613-3p ; hsa-mir-5096 ; hsa-mir-4259 ; hsa-mir-4425 ; hsa-mir-450b-3p ; hsa-mir-5089-5p ; hsa-mir-571 ; hsa-mir-6513-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p

Nearest miRNA

hsa-mir-12136/Upstream/1099731; hsa-mir-101-1/Downstream/1392138;

Nearest TSS

Nearest CpG islands

chr1-CpG: 82/Target, None/Upstream, None/Downstream

Upstream sequence

GTGACTTCCCCACTCGGGGCCCGGTCGGAAAACGCAAAGGGCCTGCGCGCGATGACCTCCAGGGCCCCTCCCAGGCCCAGTGTGGAACTCCCTAACACCC

Downstream sequence

TCGCTCGCCCTCTCTCTGCGGAGAATCCCCCCGCACCGCTGCGGCCGGGTTCGGCTAGAGCCTCCCGGCTTTCAGAGCACCCTGAGGGGAGGAGCTTCCG