Basic Information
VIS ID
TVIS44021849
Fusion event
HTLV-1-LINC01102 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
105056334/104439876 (Hg38)
End
105056334/104439876 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
LINC01102
Nearest miRNA
hsa-mir-1285-2/Upstream/2007510; hsa-mir-10b/Downstream/4701614;
Nearest TSS
ENST00000437798/Upstream/5498; ENST00000438566/Downstream/70633;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1702921, chr2-CpG: 44/Downstream/219254
Upstream sequence
GAGAACTTCCACTGTGTAGTCTAAGGAAGGAAGAATAGAGATGGTGAATGCTCACTTAGTCTTGGACTTGTGCCCACATACTAAAACTGAAGTGTTGTTG
Downstream sequence
AATTTGGTAACGGTTGTAAATGTTCACTATTTCAACCAGACATTTTCTAGAAAGGCACATAAATGCCTTCAGGAATGCCAATAGTTTATAACACAAGGAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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