Basic Information
VIS ID
TVIS44021897
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p24.3
Reference genome
GRCh37/hg19
Start
14945883/14805759 (Hg38)
End
14945883/14805759 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3125/Upstream/2068315; hsa-mir-10b/Downstream/4542670;
Nearest TSS
ENST00000437798/Upstream/170263; ENST00000438178/Downstream/101905;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/170074, chr2-CpG: 27/Downstream/755256
Upstream sequence
ggGCTGCTTCCAAATTCTATCCCTTcaccagtgctttagccacatcaaaccacccactgcaacccatacagataatttctttcttgcctttgtgtcttag
Downstream sequence
catgccatttttctcctgcctggacttttattgactgcctttgcctgtttggaaaacgcccattgatccttcagtgcacctctactttcaagccttcata
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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