Basic Information
VIS ID
TVIS44021900
Fusion event
HTLV-1-LOC105373689 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q23.3
Reference genome
GRCh37/hg19
Start
153039591/152183077 (Hg38)
End
153039591/152183077 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105373689
Nearest miRNA
hsa-mir-128-1/Upstream/814666; hsa-mir-10b/Downstream/7003758;
Nearest TSS
ENST00000437798/Upstream/7085; ENST00000492942/Downstream/152160;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/6696, chr2-CpG: 128/Downstream/151901
Nearby gene
STAM2(-7085) ;
Upstream sequence
ctcttgcttgcacaatttctgaagagaagtctaatgtaattcttatccttactcctctgtaggcaaattgtggtttttttttctcctttttgcttctttc
Downstream sequence
aagattttctgtcttcaattttctacagattgaacatgattatggttaggtgcagattttttgttatttatactgtttagtgtactctgagcttcctgga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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