Basic Information
VIS ID
TVIS44021904
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
157213102/156356590 (Hg38)
End
157213102/156356590 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-128-1/Upstream/4988179; hsa-mir-10b/Downstream/2830245;
Nearest TSS
ENST00000437798/Upstream/14242; ENST00000416888/Downstream/78700;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/13756, chr2-CpG: 31/Downstream/43706
Nearby gene
NR4A2(-23815) ;
Upstream sequence
tctttttgtgtcttcacaaaaaatttcAAGATTGCTTTAACAGAATTTCTTGAAGTGGTGGTGGTTAATATTGTGCAATCCTCACTCTGAGCTGGTATAG
Downstream sequence
CATAGTTCATGCTTGGTGGGAAAAGAGGTAAGGATCTTCTTGATTCACCAAACTTCCAATAGATTTAAGGATTTAGAATTTAGTTTTATGCCATTAACTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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