Basic Information
VIS ID
TVIS44021924
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q32.1
Reference genome
GRCh37/hg19
Start
184377394/183512666 (Hg38)
End
184377394/183512666 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/2207014; hsa-mir-1244-1/Downstream/866309;
Nearest TSS
ENST00000437798/Upstream/298347; ENST00000441026/Downstream/391863;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/251811, chr2-CpG: 72/Downstream/1085453
Nearby gene
NUP35(+350982) ;
Upstream sequence
cttaaagatggtgtgtccagagtttgttctgtcagatgttcagatgtgtctggagtttcttccttctgatgggttcatggtctcgctgacttcaagaacg
Downstream sequence
aagccgcggtccttcgtggcaagtgttaccactcttaaagttggtgcggacccaaagagtgagcagcagcaagatttattgtgaagagcaaaagaacaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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