Basic Information
VIS ID
TVIS44021950
Fusion event
HTLV-1-LINC01807 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
229427060/228562344 (Hg38)
End
229427060/228562344 (Hg38)
Orient
+
Location type
Intronic
Target gene
LINC01807
Nearest miRNA
hsa-mir-10b/Upstream/1090157; hsa-mir-1244-1/Downstream/2800364;
Nearest TSS
ENST00000437798/Upstream/380699; ENST00000465090/Downstream/49051;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/380507, chr2-CpG: 50/Downstream/708648
Nearby gene
SPHKAP(-380699) ;
Upstream sequence
AAGAAAAGTATTTCATTCCCTTCCTTTTCAGAGTGAAATGTGTCTTTATTCATGAGTACAATAAACTACCTGGAGTCATGACATGTACTTATGGGATTTA
Downstream sequence
TATAGAGCAATACATTTGAGCATCTGAAATAGAGCTCCAAACTACATCTTCTTAGGAAAAATTGTTTTGCTTACATATTCCTGTGATCTTTTATTTCTAC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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