Basic Information
VIS ID
TVIS44021973
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
36356158/36129015 (Hg38)
End
36356158/36129015 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1301/Upstream/657529; hsa-mir-10b/Downstream/11248660;
Nearest TSS
ENST00000437798/Upstream/966212; ENST00000428774/Downstream/226099;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/2401398, chr2-CpG: 191/Downstream/226239
Nearby gene
CRIM1-DT(-225734) ;
Upstream sequence
TAAATTATAAGGCAAACAAACTGTTCCCCACCTGACCTCATCATCCCACCCTTCTCTGCTGTGACATCTGCAATTTCCCAGGGAGCTGGTACTCATCTAT
Downstream sequence
GACTTCTTCTTTTAGTAGGCACATCTGGATTGGTGGAGGCTTTAAAAATCTCTGCTTCATGTCTCCCATCTATGTACATTCTAATTCAAGTGCGTATAAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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