Basic Information
VIS ID
TVIS44021974
Fusion event
HTLV-1-CEBPZ integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p22.2
Reference genome
End
37435041/37207898 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-1301/Upstream/1736412; hsa-mir-10b/Downstream/10169777;
Upstream sequence
atatcagagcagaactaaataaaactgaagcaaacactacaaaagataaatgaaacaaaaagctggttctgtggaaaaataaagaaaatcggtagaccat
Downstream sequence
tagcaagattaaccaaaaaaagaagagagaagatctgaataagctcaattagagacgaaatgggagatactacaaccgataccacagaaatacaaaagat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate