Basic Information
VIS ID
TVIS44021980
Fusion event
HTLV-1-LINC01121 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p21
Reference genome
GRCh37/hg19
Start
45479200/45252061 (Hg38)
End
45479200/45252061 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA2S
Target gene
LINC01121
Nearest miRNA
hsa-mir-1301/Upstream/9780575; hsa-mir-10b/Downstream/2125614;
Nearest TSS
ENST00000437798/Upstream/83478; ENST00000472021/Downstream/196034;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/81014, chr2-CpG: 19/Downstream/58871
Upstream sequence
agttACTCATGGTGGTGAAATGTGAAAAGGGTATGTGAGAGACAGGTCATCTCTTTCCAAGTGTTATTAAGGAGGGATCATgattggtactggaggatcc
Downstream sequence
aagacagcttcacactcccatgtctggtgccttggctaggaaggctggaatggcagggggttgatcacgccccctctccagcaaggtggtctgacttcct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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