Basic Information
VIS ID
TVIS44021994
Fusion event
HTLV-1-chr2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p15
Reference genome
GRCh37/hg19
Start
62698163/62471028 (Hg38)
End
62698163/62471028 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105374764 ; TMEM17
miRNAs that regulate target gene
hsa-mir-192-5p
Nearest miRNA
hsa-mir-1301/Upstream/265111; hsa-mir-10b/Downstream/1869719;
Nearest TSS
ENST00000437798/Upstream/7901; ENST00000467436/Downstream/35313;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/13611, chr2-CpG: 79/Downstream/34595
Nearby gene
TMEM17(-29193) ;
Upstream sequence
GCAAAGCCTGTTTGCAAACAGTGAGATGTAGGTCCTCTCCTGGGGGCTACAGGCTGCTGCTTCTCAAAAAGAGGCCACACCAAGGGAATGTGAGCAATGG
Downstream sequence
AGAGGAAGCTCAGCCTCTCTCCAGATGCAGGGTCTGGACTGCGGGTTCCAGGTAGTGCCCTTGGGCCCCGTGACCTGAGGAGCTGAGAGAGGCCCACGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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