Basic Information
VIS ID
TVIS44022007
Fusion event
HTLV-1-C2orf81 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr2
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
74648632/74421505 (Hg38)
End
74648632/74421505 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA2S ; FRA2E
Target gene
C2orf81
miRNAs that regulate target gene
hsa-mir-335-5p
Nearest miRNA
hsa-mir-1285-2/Upstream/4168500; hsa-mir-10b/Downstream/669307;
Nearest TSS
ENST00000437798/Upstream/2963; ENST00000475328/Downstream/55;
Nearest CpG islands
chr2-CpG: 82/Target, None/Upstream, None/Downstream
Upstream sequence
TTGGTCATCTAAACTCCCGCGCGGTGGGCGGGAGCAAGTAGGGGCACTGGGCGGCCCAGAGCCAGCCCACTGTTCCCGACACCGACCTTAACGGCCGACC
Downstream sequence
CTGGCTCTGGCGCATCCCCAGCTGAACTGAAGCTCACCGAGCCTTCGTGCGCCATCGCCAACGCGGTCGCAGCAACGCTGGTGTTTCTGCTGCATCCGGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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