Basic Information
VIS ID
TVIS44022045
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q13.32
Reference genome
GRCh37/hg19
Start
117426628/117707781 (Hg38)
End
117426628/117707781 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/857414; hsa-mir-12124/Downstream/2376783;
Nearest TSS
ENST00000440867/Upstream/16849; ENST00000482766/Downstream/82892;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1923047, chr3-CpG: 75/Downstream/288936
Nearby gene
LINC00901(No orient, 775543)
Upstream sequence
CTTGTAATCCTTTTAAGTGACTTTCTGATTTAAGTTAATTTCCTAATGGGAATTATTCACACAAACACTTCCCCAAATTACTGAGTTTACTGTCCCTTCT
Downstream sequence
TGAGACAGTAAAAGAAATTCAGTAACCTAAATGTTCATGCCTTCTTACTAGGAAGACTTTGGGAAGAGCAGTTGCTGCTGTCACACTCATTATCCTTTAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate