Basic Information
VIS ID
TVIS44022051
Fusion event
HTLV-1-LOC102723582 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
122137738/122418891 (Hg38)
End
122137738/122418891 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC102723582
Nearest miRNA
hsa-let-7g/Upstream/1369176; hsa-mir-12124/Downstream/742903;
Nearest TSS
ENST00000440867/Upstream/2666; ENST00000383661/Downstream/40994;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2654, chr3-CpG: 124/Downstream/95167
Upstream sequence
AATACTGATACAGGTAAATCCGAAGTGGCAGAACAGAGATTTGCATTTTGGGTTCCTTATTTATTCATTTATGAGACGGAGTTTTGCTGAATACTGATAC
Downstream sequence
ATGTAGGTAAATCCAAAGTGGCAGAATAAGAGATACGCATTTTGGGTTTCTTATTTACTTATTAAtttatttatgagacggagttttgcccttgtcgccc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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