Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene128529867128479427128493185128489212128502348128481848128493649128463594128472317128462439128467248128496153128498367128479621128480957128495204128496118128463477128463536128496153
Basic Information
VIS ID
TVIS44022063
Fusion event
HTLV-1-GATA2-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
128214996/128496153 (Hg38)
End
128214996/128496153 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
GATA2-AS1
Nearest miRNA
hsa-let-7g/Upstream/908977; hsa-mir-12124/Downstream/350655;
Nearest TSS
ENST00000440867/Upstream/2968; ENST00000491681/Downstream/77576;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/2722, chr3-CpG: 143/Downstream/216
Upstream sequence
ATGAGGAAGAGGCACTGGTGGGGACAGGCCTGGAGCTTGGGGACACTTGGAGACagacagaaataaacaactaaaaagtggcagaaagggtcagaaagat
Downstream sequence
gggaataaaagcaaagaaggtgataaccacagagacatggacagagacaggagagagataagagaggacagagagataagacaaaaatagagaGATTCAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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