Basic Information
VIS ID
TVIS44022076
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p25.1
Reference genome
GRCh37/hg19
Start
14325312/14283812 (Hg38)
End
14325312/14283812 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/3889250; hsa-let-7g/Downstream/1212427;
Nearest TSS
ENST00000440867/Upstream/105029; ENST00000622810/Downstream/20033;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/104904, chr3-CpG: 39/Downstream/13937
Nearby gene
LINC01267(No orient, 64639)
Upstream sequence
ACCCAGGCAGAGCGGGCAGTcagatgtgaccactggggccaagagggctgaggttacttgcctggcacctcatggctactcattggtggactctggattt
Downstream sequence
gaacctacatctgcccgcctgaaggcccctgTGGTGTAGCCAAAAGGAGCATGTGGCATCTGTTAGGCTCACATCTGGCTGACAGTGGCTGTTTTGTGCA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate