Basic Information
VIS ID
TVIS44022085
Fusion event
HTLV-1-AADACL2-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
151601487/151883699 (Hg38)
End
151601487/151883699 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA3D
Target gene
AADACL2-AS1
Nearest miRNA
hsa-let-7g/Upstream/317704; hsa-mir-1224/Downstream/7398947;
Nearest TSS
ENST00000440867/Upstream/10056; ENST00000477171/Downstream/44469;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/796318, chr3-CpG: 92/Downstream/384839
Upstream sequence
ACTTTAGGGCCCTAAACTAAAATTATAAGAGCTATTTCATTTGCTTGTTGTACTGGGTAATTGTAAGAATCACAAACAATAAATCATGAAAATCCTTTCT
Downstream sequence
GGGTTTGTGGTTTCTAAAGGAAATAATATTGAGCTTTTGTATTTTGTCTTTTAATTGGCTCCCTGGTATCTTCAGAATGATGTCTAGATTCTTCAGTCTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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