VISDB Viral Integration Site DataBase

VIS ID

TVIS44022096

Fusion event

HTLV-1-RSRC1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr3

Cytoband

q25.32

Reference genome

Start

End

158233276/158515487 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-30a-3p ; hsa-mir-665 ; hsa-mir-31-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-4649-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-4433b-5p ; hsa-mir-664b-3p ; hsa-mir-579-3p ; hsa-mir-5696 ; hsa-mir-421 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-4433a-5p ; hsa-mir-1250-3p ; hsa-mir-4756-3p ; hsa-mir-4709-5p ; hsa-mir-6834-3p ; hsa-mir-590-3p ; hsa-mir-513b-3p ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-7703 ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-1292-3p ; hsa-mir-338-3p ; hsa-mir-4530 ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-4684-5p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-3675-3p ; hsa-mir-522-3p ; hsa-mir-224-3p ; hsa-mir-6771-3p ; hsa-mir-3662 ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-10b-5p

Nearest miRNA

hsa-let-7g/Upstream/6949492; hsa-mir-1224/Downstream/767159;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/405079, chr3-CpG: 44/Downstream/55524

Upstream sequence

gttgaaaattcttttctttaagaatgttgaatattggccccgactctcttctggcttgtagcgtttctgccgagagatccgctgttagtctgatgggctt

Downstream sequence

ccctttgagggtaacccgacctttctctctggctgcccttaacattttttccttcatttcaactttggtgaatctgacaattatgtgtcttggagttgct