Basic Information
VIS ID
TVIS44022103
Fusion event
HTLV-1-LOC102724419 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.1
Reference genome
GRCh37/hg19
Start
163838623/164120835 (Hg38)
End
163838623/164120835 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC102724419
Nearest miRNA
hsa-let-7g/Upstream/3716010; hsa-mir-1224/Downstream/50636;
Nearest TSS
ENST00000440867/Upstream/645768; ENST00000494915/Downstream/565241;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/116328, chr3-CpG: 23/Downstream/3259304
Nearby gene
MIR1263(-50636) ;
Upstream sequence
agattaataactttggaaaaaagagaagaaatcaggattggacagaagaatacattgggcttcagtaactcaacccatggggagctctaaaactagcaca
Downstream sequence
gaccttcaaagttggtctgcatgatggtaaagagtctgatgacaccaggtgaaagttgcccctgggatgtaggcacaacttgagtgaagcagttacgtta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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