Basic Information
VIS ID
TVIS44022117
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q26.33
Reference genome
GRCh37/hg19
Start
182495570/182777782 (Hg38)
End
182495570/182777782 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA3C
Nearest miRNA
hsa-let-7g/Upstream/6262631; hsa-mir-1224/Downstream/1109018;
Nearest TSS
ENST00000440867/Upstream/36934; ENST00000493826/Downstream/15612;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/94730, chr3-CpG: 159/Downstream/15296
Nearby gene
ATP11B(+15721) ;
Upstream sequence
ttgggctctcaaaatggcaccatgctgtagctgcttaggactttggggtttgtgggacccagtatgagctttctctctggagtagtaccattgggtacca
Downstream sequence
ttgggtggtctccaggcagcccaaaagggccaaggggctctcctgtggctaggattgcaggaatccaccatgggaatgtggactgaggggtctctaactt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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