Basic Information
VIS ID
TVIS44022123
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
192770786/193052997 (Hg38)
End
192770786/193052997 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/3222988; hsa-mir-3137/Downstream/2081509;
Nearest TSS
ENST00000440867/Upstream/134836; ENST00000264735/Downstream/123867;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/134819, chr3-CpG: 84/Downstream/187923
Nearby gene
MB21D2(-134836) ;
Upstream sequence
CATCAGGATTACTCTATTACCCTCCCTCTCAGTCTTGGAGGATGAGGCCATGTTACTAGGCTGCTGCACTGAGGAAATGTTGAGCCTGACCTGATTGGAA
Downstream sequence
TCTCAATGGCAATTAAGGAAAGACTATACCTTGTCATCTGTATTTGAATCTCTAGAGTTGTCTCtaattaattatttattctttaatttataaGCTTATA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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