Basic Information
VIS ID
TVIS44022124
Fusion event
HTLV-1-LINC02026 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
193680338/193962549 (Hg38)
End
193680338/193962549 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC02026
Nearest miRNA
hsa-let-7g/Upstream/4132540; hsa-mir-3137/Downstream/1171957;
Nearest TSS
ENST00000440867/Upstream/118525; ENST00000426616/Downstream/18065;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/92449, chr3-CpG: 36/Downstream/40615
Upstream sequence
CATAGAGAGGGATGATGTTGTAGCACTGTAGCACATAGAATATCCAATAAAAATTTGCCTAATGAATGAATGAACAAATGGGTGAACTACTATGGTCATT
Downstream sequence
TAACTGAAATAATACTTCTTCAAATGCTAAAGAAAATATTGTTAGTGATGGTAACTAATTTAAGTTCCATCATAAATACCCAGCTCTGATCCAAAAGTTA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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