Basic Information
VIS ID
TVIS44022158
Fusion event
HTLV-1-chr3 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
p21.31
Reference genome
End
44459013/44417521 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12127/Upstream/303211; hsa-let-7g/Downstream/444367;
Nearby gene
TCAIM(No orient, 8073)
Upstream sequence
CACACAAACTCTGCAACTGCATTGCACGGAGCTCTGACCCAGGGGGACTTGTCCTTGACTCCAGGCCTGCAAAGAAAAGCAAGAGGGAGCATTTCACATG
Downstream sequence
GGAGAAGCCACTTGAGTGGCTGGGGGAGAGGCACAGAGCTGGGAAAGAGCAGATGTGAGAGCAGGCCTTGAGTCAGAAGGCACTAGAGATGGTGAGGGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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