Basic Information
VIS ID
TVIS44022212
Fusion event
HTLV-1-LOC105374007 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr3
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
99186019/99467175 (Hg38)
End
99186019/99467175 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374007
Nearest miRNA
hsa-let-7g/Upstream/3107136; hsa-mir-12124/Downstream/497139;
Nearest TSS
ENST00000440867/Upstream/486117; ENST00000471993/Downstream/33172;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/565123, chr3-CpG: 43/Downstream/350594
Nearby gene
MIR548G(No orient, 87134)
Upstream sequence
gagacctgcctcaactgggagtttaaactcagtcattcaagctCTCAGCCAAGTTCTCAATTTTTTTTACCCTACCCCCAAAGGTTAGAACCTCCTTGTG
Downstream sequence
TGACTCCATATAAGCTCTCTACATAATcttagtttttcataatctgtattcagggcatcagttaggcttagcaatagacgctcaattttttgttgttttt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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