Basic Information
VIS ID
TVIS44022218
Fusion event
HTLV-1-LOC105377374 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q26
Reference genome
GRCh37/hg19
Start
114358871/113437715 (Hg38)
End
114358871/113437715 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105377374
Nearest miRNA
hsa-mir-12113/Upstream/285353; hsa-mir-1305/Downstream/1219044;
Nearest TSS
ENST00000502981/Upstream/64356; ENST00000503557/Downstream/76127;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/731364, chr4-CpG: 86/Downstream/323198
Nearby gene
CAMK2D(-13317) ;
Upstream sequence
CAAGATTGATGGCAAAATACTTGTGGAAGTTATAAGATTGTTTTTAAAAAAATCTGTGGTGCATAAGATCTACTAACAGCTGTTGCCCATGGTCCATGCT
Downstream sequence
AAGGACTACTTACTAGTCTTTTTCTGATTTTTCTGGGACATCTACCCTACCTAGGAAATCCAGACAGGTCTCTCTCTCTAGCTCAGCTCAGCAGTGtctc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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