Basic Information
VIS ID
TVIS44022237
Fusion event
HTLV-1-LINC01182 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
13912838/13911214 (Hg38)
End
13912838/13911214 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA4D
Target gene
LINC01182
Nearest miRNA
hsa-mir-12113/Upstream/283257; hsa-mir-12115/Downstream/6617061;
Nearest TSS
ENST00000502981/Upstream/91104; ENST00000514339/Downstream/223722;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/283183, chr4-CpG: 31/Downstream/951670
Upstream sequence
ATGGAAGGGAGCTAGTTATAGGCTGCACTGTAAAAGTTTTCTAAGAGGATGCTACCTGGAGAGATGAAGTGACCAAATGAGATAATGTGTAAGTAGAAAG
Downstream sequence
GAAGGCAGGGCCTGAAAGACTGTTGTGCATGACCAGCTACTGCAAGCACTGAAGCAGCAGGAATTGGTTCTTCTTTATCAAGAAATATTTATAAATTTAA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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