Basic Information
VIS ID
TVIS44022239
Fusion event
HTLV-1-SCOC-AS1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
141243329/140322175 (Hg38)
End
141243329/140322175 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA4C
Target gene
SCOC-AS1
Nearest miRNA
hsa-mir-12113/Upstream/14814868; hsa-mir-1305/Downstream/3021285;
Nearest TSS
ENST00000502981/Upstream/64889; ENST00000502535/Downstream/21268;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/68762, chr4-CpG: 55/Downstream/51337
Upstream sequence
tctagaactgtgagaaataaatgtctgtttctttaaaataaattgtctagtctgtggtattttgttatagtagtctaaaacagactatgacagaaattgg
Downstream sequence
tacgagaggagtgaggtgttgctgtaataaatacctacaaatgtggaagcaactttgtaactgggtgatgggtagaggctgaaacagttttggagtgaat
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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