Basic Information
VIS ID
TVIS44022252
Fusion event
HTLV-1-LOC101927947 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
154993208/154072056 (Hg38)
End
154993208/154072056 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC101927947
Nearest miRNA
hsa-mir-12113/Upstream/1535540; hsa-mir-1305/Downstream/5056746;
Nearest TSS
ENST00000502981/Upstream/282936; ENST00000625026/Downstream/70066;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/278968, chr4-CpG: 39/Downstream/260922
Nearby gene
DCHS2(-162319) ;
Upstream sequence
ACTTGTTCTCAGTCTTGAGTACATTGCATAAACTGGTGATTACCTGTCTTGGTTTTATAACATTCCACACTATCTCCAGTTGCCTTAGAGTTGTACattt
Downstream sequence
taaaaataactttatttaatttattGGAAGAATAAATACATGTCCTAGAGTGCTTTTAGGGAGAAACGTTTTCAAGCCAAATAATAATAATAGTTTGGGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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