Basic Information
VIS ID
TVIS44022280
Fusion event
HTLV-1-LOC105374524 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
23130082/23128459 (Hg38)
End
23130082/23128459 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA4D
Target gene
LOC105374524
Nearest miRNA
hsa-mir-12113/Upstream/613074; hsa-mir-1243/Downstream/1391733;
Nearest TSS
ENST00000502981/Upstream/22957; ENST00000499715/Downstream/157114;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/612034, chr4-CpG: 266/Downstream/1341618
Nearby gene
MIR548AJ2(No orient, 69635)
Upstream sequence
ATGGTGATACTATGTTAAAGTGATGACAGCTGTCTGGGTTGATTAATCCCACCAATCGTGCAGTCACCTAATCACCTTAGAAGACCTTTGGGTTAGAGGG
Downstream sequence
GACATTAAAAGTCTTTAAGCCCATTATTGTATCTTCTCCATCTGATGCTCAGCTTTTCTGTGATTTAGAACGATTGATTCTTCACCTAAGGTGCTGAACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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