Basic Information
VIS ID
TVIS44022296
Fusion event
HTLV-1-LOC105374425 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
p13
Reference genome
GRCh37/hg19
Start
41849079/41847062 (Hg38)
End
41849079/41847062 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374425
Nearest miRNA
hsa-mir-12113/Upstream/1344943; hsa-mir-1243/Downstream/5805607;
Nearest TSS
ENST00000502981/Upstream/96717; ENST00000510383/Downstream/34781;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/95132, chr4-CpG: 20/Downstream/18306
Nearby gene
LINC00682(No orient, 32460)
Upstream sequence
tatataatttaatgctatataaggatactagtgtatagtacataagtatgtatacttacatatgtgaacattaagtatagatagtttatagataaatata
Downstream sequence
tacttattttgagagtacctgctcaaaaatgttttactagtaaaaggacacaattcaaaaTAATATTCTACCATCTGAACGATGTGTCTATCACTTTGCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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