Basic Information
VIS ID
TVIS44022314
Fusion event
HTLV-1-chr4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q12
Reference genome
GRCh37/hg19
Start
55426415/54560248 (Hg38)
End
55426415/54560248 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA4B
Nearest miRNA
hsa-mir-12113/Upstream/1847501; hsa-mir-1243/Downstream/6362371;
Nearest TSS
ENST00000502981/Upstream/113525; ENST00000514582/Downstream/46883;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/326084, chr4-CpG: 182/Downstream/96994
Nearby gene
KIT(+97680) ;
Nearest cancer related gene
KIT(OG, +97680) ;
Upstream sequence
TGTTCTTTCCATTTATGAATTCCAGGAACTCCTTTCCTTGAAGTCTATAGCTTCCATCAACAGGATATTAGTTGGTGAATTCTATTTGAAGCCACAGAGG
Downstream sequence
AAAAAACTTTCAATTAGGATCTGAATAGGTCAAGGGGGTGATTGGCTGTCCAGAGGATATGCAGCAGGAAGAGAAACCAGAGTTCAAATGAAGGGTGGAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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