Basic Information
VIS ID
TVIS44022335
Fusion event
HTLV-1-LOC107986294 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr4
Cytoband
q21.21
Reference genome
GRCh37/hg19
Start
80514511/79593357 (Hg38)
End
80514511/79593357 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107986294
Nearest miRNA
hsa-mir-12113/Upstream/3017731; hsa-mir-1243/Downstream/3159980;
Nearest TSS
ENST00000502981/Upstream/100764; ENST00000513155/Downstream/3185;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/653766, chr4-CpG: 39/Downstream/371333
Nearby gene
LINC00989(No orient, 16897)
Upstream sequence
CACTATGCCTTATATCAACACATAATATGGTGGCtagtatattaaagtttattatgtgatttttcttttaacttctcaattaattttaatagtgactatg
Downstream sequence
tgaacttcacaattctgccccccattttattttttagttgactaaagtgagacccagagagctatcaataagttaaccctcaaacaggcttgtattaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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