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TVIS44022359
Basic Information
VIS ID
TVIS44022359
Fusion event
HTLV-1-ANKRD33B integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
10618463/10618351 (Hg38)
End
10618463/10618351 (Hg38)
Orient
+
Location type
Exonic
Target gene
ANKRD33B
miRNAs that regulate target gene
hsa-mir-17-5p
;
hsa-mir-20a-5p
;
hsa-mir-93-5p
;
hsa-mir-106a-5p
;
hsa-mir-142-5p
;
hsa-mir-106b-5p
;
hsa-mir-20b-5p
;
hsa-mir-448
;
hsa-mir-519c-3p
;
hsa-mir-526b-3p
;
hsa-mir-519b-3p
;
hsa-mir-519d-3p
;
hsa-mir-519a-3p
;
hsa-mir-5590-3p
;
hsa-mir-200b-3p
;
hsa-mir-200c-3p
;
hsa-mir-429
;
hsa-mir-655-3p
;
hsa-mir-374c-5p
;
hsa-mir-125b-5p
;
hsa-mir-125a-5p
;
hsa-mir-670-5p
;
hsa-mir-3154
;
hsa-mir-4319
;
hsa-mir-4324
;
hsa-mir-4251
;
hsa-mir-6770-5p
;
hsa-mir-18a-3p
;
hsa-mir-874-3p
;
hsa-mir-3173-5p
;
hsa-mir-6752-3p
;
hsa-mir-6799-3p
;
hsa-mir-542-3p
;
hsa-mir-4501
;
hsa-mir-190a-3p
;
hsa-mir-605-5p
;
hsa-mir-5011-5p
;
hsa-mir-6083
;
hsa-mir-4709-3p
;
hsa-mir-7704
;
hsa-mir-3179
;
hsa-mir-4526
;
hsa-mir-1250-5p
;
hsa-mir-3660
;
hsa-mir-125a-3p
;
hsa-mir-888-3p
;
hsa-mir-552-3p
;
hsa-mir-3936
;
hsa-mir-4504
;
hsa-mir-4724-5p
;
hsa-mir-8084
;
hsa-mir-4796-3p
;
hsa-mir-548ah-5p
;
hsa-mir-3609
;
hsa-mir-539-3p
;
hsa-mir-485-3p
;
hsa-mir-146b-3p
;
hsa-mir-7976
;
hsa-mir-10b-5p
;
hsa-mir-10a-5p
;
hsa-mir-504-5p
;
hsa-mir-4275
;
hsa-mir-205-3p
;
hsa-mir-1253
;
hsa-mir-4732-3p
;
hsa-mir-345-3p
;
hsa-mir-410-3p
;
hsa-mir-6855-5p
;
hsa-mir-3170
;
hsa-mir-3677-3p
;
hsa-mir-6742-5p
;
hsa-mir-193b-5p
Nearest miRNA
hsa-mir-10397/Upstream/140206; hsa-mir-103a-1/Downstream/4207578;
Nearest TSS
ENST00000502646/Upstream/53883;
ENST00000606588/Downstream/9874;
Nearest CpG islands
None/Target,
chr5-CpG: 87/Upstream/52783
,
chr5-CpG: 218/Downstream/20532
Upstream sequence
GGGTGCCCCTCGGGGTCCCCAGTGCTGACCCACCATGCTCCGACTCTGCCCCTCTGACCCGCTTCCCCTCTTCATTTCTAGACCGGCCTTATTGTCGCCT
Downstream sequence
GCTACCACGGCTTTGTGGATACCGTGGTGGCCTTAGCAGAGTGCCCCCACGTTGACGTCAACTGGCAGGACAGCGAGGGGAACACAGCCCTAATCACAGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HAM/TSP#3
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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