Basic Information
VIS ID
TVIS44022362
Fusion event
HTLV-1-DAP integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
10752008/10751896 (Hg38)
End
10752008/10751896 (Hg38)
Orient
+
Location type
Intronic
Target gene
DAP
miRNAs that regulate target gene
hsa-mir-183-5p ; hsa-mir-335-5p
Nearest miRNA
hsa-mir-10397/Upstream/273751; hsa-mir-103a-1/Downstream/4074033;
Nearest TSS
ENST00000502646/Upstream/123671; ENST00000606588/Downstream/9169;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/101656, chr5-CpG: 144/Downstream/8828
Upstream sequence
catctgcaagcccaggagagaggtctcaggagaaagcagagctgccaacaccttgatcttggacttcagcctcccaagctgggagaaataaatgtctatg
Downstream sequence
gtttaagccacccagtctgtggtattttgttaaggcaggccaaaccaacaatacaGATGCCCATTTAAAAATGATCTCTGAATCTTTCCAACTTGGCACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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