VISDB Viral Integration Site DataBase

VIS ID

TVIS44022364

Fusion event

HTLV-1-SLC12A7 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

p15.33

Reference genome

Start

End

1145297/1145182 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-148b-3p ; hsa-mir-6775-3p ; hsa-mir-7976 ; hsa-mir-1291 ; hsa-mir-6734-3p ; hsa-mir-1203 ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-4747-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-4276 ; hsa-mir-4312 ; hsa-mir-202-3p ; hsa-mir-98-5p ; hsa-mir-4500 ; hsa-mir-4458 ; hsa-let-7i-5p ; hsa-let-7g-5p ; hsa-let-7f-5p ; hsa-let-7e-5p ; hsa-let-7d-5p ; hsa-let-7c-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-766-3p ; hsa-mir-4267 ; hsa-mir-152-3p ; hsa-mir-148a-3p ; hsa-mir-519e-3p ; hsa-mir-515-3p ; hsa-mir-33b-3p ; hsa-mir-6773-5p ; hsa-mir-6724-5p ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-488-3p ; hsa-mir-3147 ; hsa-mir-4425 ; hsa-mir-296-5p ; hsa-mir-6851-3p ; hsa-mir-3194-5p ; hsa-mir-4780 ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-301b-3p ; hsa-mir-130b-3p ; hsa-mir-130a-3p ; hsa-mir-19b-3p ; hsa-mir-19a-3p ; hsa-mir-3180-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-525-5p ; hsa-mir-520a-5p ; hsa-mir-6124 ; hsa-mir-6830-5p ; hsa-mir-6849-3p ; hsa-mir-5586-5p ; hsa-mir-651-3p ; hsa-mir-4511 ; hsa-mir-605-5p ; hsa-mir-3133 ; hsa-mir-146b-3p ; hsa-mir-1587 ; hsa-mir-223-3p ; hsa-mir-29b-1-5p ; hsa-mir-302c-3p ; hsa-mir-339-5p ; hsa-mir-3620-5p ; hsa-mir-3652 ; hsa-mir-4263 ; hsa-mir-4265 ; hsa-mir-4296 ; hsa-mir-4322 ; hsa-mir-4417 ; hsa-mir-4430 ; hsa-mir-4492 ; hsa-mir-4498 ; hsa-mir-4505 ; hsa-mir-4509 ; hsa-mir-4656 ; hsa-mir-4675 ; hsa-mir-4697-3p ; hsa-mir-4741 ; hsa-mir-4744 ; hsa-mir-4795-5p ; hsa-mir-4799-5p ; hsa-mir-5001-5p ; hsa-mir-520f-3p ; hsa-mir-576-5p ; hsa-mir-5787 ; hsa-mir-6829-5p ; hsa-mir-6842-3p ; hsa-mir-762

Nearest miRNA

hsa-mir-4635/Upstream/82208; hsa-mir-10397/Downstream/164128;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/32909, chr5-CpG: 118/Downstream/9942

Nearby gene

CTD-3080P12.3(No orient, 27914)

Upstream sequence

CTGCGTGGGACAGCAGCTGGAGGCCGCAGGGGGCCCAGGGATCACCCCTTCTTCAAAGGGAACCTGGCCGAGAACTCGGCCCTCACACTTGGGTGTGGGG

Downstream sequence

TCTCTGGAGACAGGACAGTGAGTGGCCACAAGGGCCAGGCAGGGGCCGCTGCCAGTGGGCCTGGAAGACCAGCGAGGGCTCATGTCCATCACACGGTCTG