Basic Information
VIS ID
TVIS44022369
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
120564197/121228502 (Hg38)
End
120564197/121228502 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/2073786; hsa-mir-103a-1/Downstream/7869186;
Nearest TSS
ENST00000502646/Upstream/28798; ENST00000609647/Downstream/85475;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/764129, chr5-CpG: 71/Downstream/623190
Nearby gene
LOC102467226(No orient, 94048)
Upstream sequence
tgtaaattagtccagccactatggagaacaatttggagattcctcaaagaaataagtgttgaattaccattcaacccagcaatccccattactgggtata
Downstream sequence
tacccaaaggaaaataataaattattctattgtaaatacagaagcacctatatgttcatcacagcactgttcacaatacgaaaaacatgcaataaattta
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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