Basic Information
VIS ID
TVIS44022372
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
122839278/123503584 (Hg38)
End
122839278/123503584 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/4348868; hsa-mir-103a-1/Downstream/5594104;
Nearest TSS
ENST00000502646/Upstream/79992; ENST00000508708/Downstream/8515;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/79948, chr5-CpG: 90/Downstream/8383
Nearby gene
CSNK1G3(+8515) ;
Upstream sequence
TGCTGTTTCCTGTGAATGCTATCATCTTTGAAGTTGTGCTTTAAAAAGGCTTTCCTTCAGCCTGTCTCTTTTCATTGCTCTCCCATATACATACTTACAG
Downstream sequence
TTGCTCTAATTCAGTTTGGCATAAATCACTACTTTAGGAtctctctatcctttctttcctcctccttctctctttcctttattccttTGTCTAAACAGGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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