Basic Information
VIS ID
TVIS44022374
Fusion event
HTLV-1-LOC105374655 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.2
Reference genome
GRCh37/hg19
Start
12516725/12516613 (Hg38)
End
12516725/12516613 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105374655
Nearest miRNA
hsa-mir-10397/Upstream/2038468; hsa-mir-103a-1/Downstream/2309316;
Nearest TSS
ENST00000502646/Upstream/612570; ENST00000505877/Downstream/58024;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/612022, chr5-CpG: 46/Downstream/278247
Nearby gene
LINC01194(No orient, 58244)
Upstream sequence
gaaaagtgcctaccttcccatagagactggaagatagacatgctacctttctcgatgattgcatttcaaacggatggctctgaaattcttgagaaagata
Downstream sequence
ttgctgagttgtaaaactggcaagaggcttttaaggagatttatatgcatctaaattgggcagagaaagaatttgcaattacaagtatttgtaaatcctc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate