Basic Information
VIS ID
TVIS44022386
Fusion event
HTLV-1-SLC25A48 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
135033801/135698112 (Hg38)
End
135033801/135698112 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5C
Target gene
SLC25A48
Nearest miRNA
hsa-mir-10397/Upstream/1472260; hsa-mir-103a-1/Downstream/104873;
Nearest TSS
ENST00000502646/Upstream/44177; ENST00000462340/Downstream/136537;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/118934, chr5-CpG: 70/Downstream/136470
Nearby gene
LINC01959(-44177) ;
Upstream sequence
GCCATGCCAGGGACTCTGACGTTCACAGCAATCAGGCCTCGCCACCTTTAGGTCTGCATCTACCTATGAGGAGCTGCCTAAATCACATTATCTACCAAGT
Downstream sequence
TGTCAGTGCAGGGAGGCCTCTAACAACCAGCTGGGCTTCACGGGGGTGAGGGTCACCTGACACCCTCAGTGCTGTCTCCTAATGGTCACCATAAGGCCCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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