VISDB Viral Integration Site DataBase

VIS ID

TVIS44022421

Fusion event

HTLV-1-MYO10 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr5

Cytoband

p15.1

Reference genome

Start

End

16791592/16791483 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-124-3p ; hsa-mir-30a-5p ; hsa-mir-484 ; hsa-mir-183-5p ; hsa-mir-26a-5p ; hsa-mir-758-5p ; hsa-mir-218-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-450b-5p ; hsa-mir-493-5p ; hsa-let-7g-3p ; hsa-let-7a-2-3p ; hsa-let-7c-3p ; hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-3613-5p ; hsa-mir-494-5p ; hsa-mir-410-5p ; hsa-mir-323b-5p ; hsa-mir-4328 ; hsa-mir-4801 ; hsa-mir-4731-3p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-3065-5p ; hsa-mir-4475 ; hsa-mir-7856-5p ; hsa-mir-4477b ; hsa-mir-218-1-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-6826-3p ; hsa-mir-4326 ; hsa-mir-203a-5p ; hsa-mir-4667-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-3910 ; hsa-mir-506-3p ; hsa-mir-548s ; hsa-mir-4684-5p ; hsa-mir-3926 ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-3675-3p ; hsa-mir-575 ; hsa-mir-4676-5p ; hsa-mir-6858-3p ; hsa-mir-6771-3p ; hsa-mir-4272 ; hsa-mir-1270 ; hsa-mir-129-5p ; hsa-mir-139-3p ; hsa-mir-2681-5p ; hsa-mir-431-5p ; hsa-mir-4524a-3p ; hsa-mir-4531 ; hsa-mir-4797-5p ; hsa-mir-5007-5p ; hsa-mir-520d-5p ; hsa-mir-524-5p ; hsa-mir-5691 ; hsa-mir-620 ; hsa-mir-6805-3p ; hsa-mir-7850-5p ; hsa-mir-924

Nearest miRNA

hsa-mir-10397/Upstream/856223; hsa-mir-103a-1/Downstream/364447;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/89817, chr5-CpG: 118/Downstream/143963

Upstream sequence

TTCTTAAAGTCTCTGTTTCCTGAATTAATTTAGATAAATACAGTTACTCTGTTCACATCAGCATTGCATAATTGGAGCTTTCTGTTTGGGATCCACCCCC

Downstream sequence

CTCTCCCCCTTATTTTTAAATACCATGAAAATGCCAACCTCCTTCCGTTTTAATacatacatacacacacacacacacatacacatatgcacaATGATCT