Basic Information
VIS ID
TVIS44022432
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q35.3
Reference genome
GRCh37/hg19
Start
180713323/181286322 (Hg38)
End
180713323/181286322 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/63689;
Nearest TSS
ENST00000502646/Upstream/4947; ENST00000604669/Downstream/20180;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/4475, chr5-CpG: 29/Downstream/41082
Nearby gene
TRIM52-AS1(No orient, 14015)
Upstream sequence
CATGAAGCACCATGTGCCTTGGAAGACCTCCCCGATTGATCCTGTCTCCCCAGTATCTTCTGCTAAGGCAGAGGTTTCCCTGGGCCCCTGCTCTGGTCCG
Downstream sequence
CTTCCTTGGCACAGTTTGTAGCTGTGCCTGACACAGCCCACCTGCCTGGCTTCTGTCTCAAACCCACAGCCAGGCCATGTGACAGCCGCTGCCTGTGCCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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