Basic Information
VIS ID
TVIS44022436
Fusion event
HTLV-1-LOC105374618 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
p15.33
Reference genome
GRCh37/hg19
Start
2091616/2091502 (Hg38)
End
2091616/2091502 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105374618
Nearest miRNA
hsa-mir-4277/Upstream/382634; hsa-mir-10397/Downstream/4736351;
Nearest TSS
ENST00000502646/Upstream/123408; ENST00000626215/Downstream/621089;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/52667, chr5-CpG: 50/Downstream/20220
Nearby gene
CTD-2194D22.4(No orient, 191012)
Upstream sequence
aactctataaaatgaaaagagacagtgattaaaaatgatctattggtttgaatggacacttcaccatagaaaatgtgtgaatggaaaataagtccatgat
Downstream sequence
aagatgatcaataccgttagctcttagagaaatgcaagttaaaacctcaatgagacatgattgcacagttattagatggctaagattaaaaagactaatg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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