Basic Information
VIS ID
TVIS44022475
Fusion event
HTLV-1-chr5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
55539029/56243202 (Hg38)
End
55539029/56243202 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA5H
Nearest miRNA
hsa-mir-10397/Upstream/734276; hsa-mir-103a-1/Downstream/2286841;
Nearest TSS
ENST00000502646/Upstream/9843; ENST00000438117/Downstream/78195;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/247641, chr5-CpG: 59/Downstream/237575
Nearby gene
ANKRD55(-9843) ;
Upstream sequence
ttgcacggggcctgtaatccctttgttttggccaatttctcctatttggaatgggtgtgtttacccaatgcctgaacccccattttatctaaaaagggac
Downstream sequence
ttgccttgtctcagataagactttggacttggactttcgggttaatgatggaatgattaagactttgggggaccgttgggaaggcatgattgattttgaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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