VISDB Viral Integration Site DataBase

VIS ID

TVIS44022536

Fusion event

HTLV-1-JARID2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr6

Cytoband

p22.3

Reference genome

Start

End

15252365/15252134 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-204-5p ; hsa-mir-130b-3p ; hsa-mir-26b-5p ; hsa-mir-24-3p ; hsa-mir-19b-3p ; hsa-mir-16-5p ; hsa-mir-615-3p ; hsa-let-7c-5p ; hsa-mir-7-5p ; hsa-mir-218-5p ; hsa-mir-6792-5p ; hsa-mir-340-5p ; hsa-mir-3171 ; hsa-mir-383-3p ; hsa-mir-15a-5p ; hsa-mir-15b-5p ; hsa-mir-424-5p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-195-5p ; hsa-mir-4276 ; hsa-mir-5190 ; hsa-mir-576-5p ; hsa-mir-4263 ; hsa-mir-505-3p ; hsa-mir-7159-5p ; hsa-mir-4709-5p ; hsa-mir-421 ; hsa-mir-3678-3p ; hsa-mir-4664-5p ; hsa-mir-342-5p ; hsa-mir-2467-3p ; hsa-mir-6501-3p ; hsa-mir-2278 ; hsa-mir-513b-3p ; hsa-mir-503-5p ; hsa-mir-4477b ; hsa-mir-541-5p ; hsa-mir-1229-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-197-3p ; hsa-mir-3115 ; hsa-mir-3132 ; hsa-mir-197-5p ; hsa-mir-548au-3p ; hsa-mir-449b-5p ; hsa-mir-449a ; hsa-mir-34c-5p ; hsa-mir-34a-5p ; hsa-mir-6809-5p ; hsa-mir-31-5p ; hsa-mir-6868-5p ; hsa-mir-3128 ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-4704-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-6849-5p ; hsa-mir-3681-5p ; hsa-mir-6854-5p ; hsa-mir-4681 ; hsa-mir-5583-3p ; hsa-mir-4796-3p ; hsa-mir-148a-3p ; hsa-mir-148b-3p ; hsa-mir-152-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-19a-3p

Nearest miRNA

hsa-mir-3691/Upstream/4812340; hsa-mir-10398/Downstream/889422;

Nearest TSS

Nearest CpG islands

None/Target, chr6-CpG: 120/Upstream/3323, chr6-CpG: 51/Downstream/244439

Upstream sequence

gactccattcaaaaaaaaatgtgggccagacatttttaagatgtttgggaaaatctgaaaggactgtccacacacattgctttgcaagtgattccctttt

Downstream sequence

aagaaccaaacttcagttatgcccagacttccccaacaatcaaaacagcataatgtagaacaacagaacgttcagagacttaagctcagaaagaagaccc