Basic Information
VIS ID
TVIS44022558
Fusion event
HTLV-1-ZSCAN12P1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
28062151/28094373 (Hg38)
End
28062151/28094373 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
ZSCAN12P1
Nearest miRNA
hsa-mir-3143/Upstream/946685; hsa-mir-10398/Downstream/2489959;
Nearest TSS
ENST00000381078/Upstream/13243; ENST00000340487/Downstream/30187;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/200556, chr6-CpG: 43/Downstream/10313
Upstream sequence
tttctcctatgtgcccgtgaaggtaaggtcttgtgagcacaacagcaaaaaggtgatcatctgaaagccagaaggagagccctcaccagaaaccaaccat
Downstream sequence
gttagtaccctgatctcaacctccagaactgtgagaaaataaatttctcttatttaaaccaccagtatagtattttgttatggcagcccaaCTTAACACC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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