Basic Information
VIS ID
TVIS44022621
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
77018822/76309105 (Hg38)
End
77018822/76309105 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/880632; hsa-mir-10524/Downstream/2230158;
Nearest TSS
ENST00000381078/Upstream/236427; ENST00000626131/Downstream/252223;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/559555, chr6-CpG: 132/Downstream/1153409
Nearby gene
IMPG1(-236427) ;
Upstream sequence
aaagtactcatcagctttattttttaaccaacattctggttgcatatgtatgtcttgttttaaatcataattttcttgattactcatgaagctgagaatc
Downstream sequence
tattcatccttatttgccacaagtgtttcatcttctatgaattgcctagacatatcttttggccacctatttcctgtttatattttcttagtaatttgaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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