Basic Information
VIS ID
TVIS44022624
Fusion event
HTLV-1-chr6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
78267559/77557842 (Hg38)
End
78267559/77557842 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10398/Upstream/2129369; hsa-mir-10524/Downstream/981421;
Nearest TSS
ENST00000381078/Upstream/94069; ENST00000602452/Downstream/132816;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/93467, chr6-CpG: 36/Downstream/92298
Nearby gene
HTR1B(-93820) ;
Upstream sequence
GCCTTGGCTACTGTTCTGCATTTCAGGTTCTATCTCCTACTTAGCATGGACCAAACATTTCTGTTGTCTGCTTCTTTGCAAGAGAGTGAAAGTCCAGTGT
Downstream sequence
GAAGGCATCAAAGACATATTCCACTCTCAGCATCATATAGGTCTTTTAGGGAGCTTAATTTTTAATTTGTTTACCCATCTAGCCAATCCCAattattatt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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