Basic Information
VIS ID
TVIS44022630
Fusion event
HTLV-1-LOC112267962 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
81322175/80612458 (Hg38)
End
81322175/80612458 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC112267962
Nearest miRNA
hsa-mir-10398/Upstream/2073149; hsa-mir-1202/Downstream/9700284;
Nearest TSS
ENST00000381078/Upstream/145500; ENST00000614959/Downstream/939228;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/505489, chr6-CpG: 231/Downstream/1138958
Nearby gene
BCKDHB(+266188) ;
Upstream sequence
ggagtggtacactcctgcccaaatactgtgcttttcccacagtcttcacaactgccagaccaggagatcccctcccatgcctggctcagtgggtcccatg
Downstream sequence
cccatggagccttgctcactgctagcgcagcagtctgagattgacatgggatgtgggagcttagcaggtgaggggcgtctgccactgctgaggcttgagc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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