Basic Information
VIS ID
TVIS44022631
Fusion event
HTLV-1-LOC107986620 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr6
Cytoband
q14.3
Reference genome
GRCh37/hg19
Start
85197908/84488190 (Hg38)
End
85197908/84488190 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC107986620
Nearest miRNA
hsa-mir-10398/Upstream/5948881; hsa-mir-1202/Downstream/5824552;
Nearest TSS
ENST00000381078/Upstream/13261; ENST00000591225/Downstream/67962;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/260180, chr6-CpG: 129/Downstream/274794
Nearby gene
LINC01611(No orient, 13261)
Upstream sequence
ttgaacctaaagttactctaataaataaagtccatttttaaaaaaaaaagttaaacagcattattatataactcaacaatttcattcctaggtatatact
Downstream sequence
caagagaaaagaaaacacatgtccacacaaaaagcttgtacatgaatgctcataacggtagtattccagacagccaagatgtggaaataaatgaaatatc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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