Basic Information
VIS ID
TVIS44022686
Fusion event
HTLV-1-chr7 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
156767376/156974682 (Hg38)
End
156767376/156974682 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/5541043; hsa-mir-153-2/Downstream/599654;
Nearest TSS
ENST00000635602/Upstream/5927; ENST00000429228/Downstream/31625;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/6140, chr7-CpG: 100/Downstream/24942
Nearby gene
NOM1(+1500) ;
Upstream sequence
cagatgtctctttgaaatggtgacttagttcttttaggtgtatacccagttgtgggattagtggatcatatggaagttctatttttaattttttgaggag
Downstream sequence
cttccctactgctttccataatggctgtgccaatttacatttccaccaaccgcctgtgaggaaaacggtgtgggttcccttttctccatgcctttgccaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate